بررسی منشأ احتمالی و سیر تحول کرونا ویروس‌ها با تمرکز بر عامل عفونت COVID-19

نوع مقاله : مقاله مروری

نویسندگان

1 دکتری تخصصی اصلاح نباتات، آزمایشگاه جامع تحقیقات، دانشگاه علوم پزشکی اصفهان، اصفهان، ایران

2 دکتری تخصصی زیست‌شناسی تکوینی، آزمایشگاه جامع تحقیقات، دانشگاه علوم پزشکی اصفهان، اصفهان، ایران

3 استاد، گروه انگل و قارچ‌شناسی، دانشکده‌ی پزشکی، دانشگاه علوم پزشکی اصفهان، اصفهان، ایران

چکیده

بیماری کرونا ویروس 19 (Coronavirus disease 2019 یا COVID-19) یک عفونت ویروسی فراگیر و به شدت پاتوژن ناشی از  Severe acute respiratory syndrome coronavirus (SARS-CoV-2) است که در ووهان چین ظاهر و در سراسر دنیا گسترده شده است. بررسی ژنوم این ویروس، نشان داده است که SARS-CoV-2 از نظر فیلوژنتیک با ویروس‌های خفاشی شبه SARS شباهت بالایی دارد. بنابراین، خفاش می‌تواند به عنوان مخزن اولیه‌ی این ویروس در نظر گرفته شود. منبع حد واسط و مبدأ انتقال این ویروس به انسان، تا کنون شناسایی نشده است. در مطالعه‌ی حاضر، منشأ وتکامل ویروس SARS-CoV-2 در مقایسه با دو ویروس سندرم تنفسی SARS-CoV و Middle East respiratory syndrome coronavirus (MERS-CoV) و همچنین، شواهد ژنتیک و فیلوژنتیک SARS-CoV-2 مورد بحث قرار خواهد گرفت

کلیدواژه‌ها

عنوان مقاله [English]

Study of the Possible Origin and Evolution of Coronaviruses, Focusing on Recent 2019 Novel Coronavirus (COVID-19)

نویسندگان [English]

  • Shima Gharibi 1
  • Vajihe Azimian-Zavareh 2
  • Seyed Hossein Mirhendi 3
1 PhD in Plant Breeding, Core Research Facilities, Isfahan University of Medical Sciences, Isfahan, Iran
2 PhD in Developmental Biology, Core Research Facilities, Isfahan University of Medical Sciences, Isfahan, Iran
3 Professor, Department of Parasitology and Mycology, School of Medicine, Isfahan University of Medical Sciences, Isfahan, Iran
چکیده [English]

Coronavirus disease 19 (COVID-19) is a pandemic highly pathogenic viral infection caused by severe acute respiratory syndrome coronavirus (SARS-CoV-2) appeared in Wuhan of China and then spread worldwide. The genome assessment of this virus revealed that SARS-CoV-2 has phylogenetically high similarity with SARS-like bat viruses. So, the bat can be considered as a primary reservoir of this virus. The intermediate and transfer source of this virus to human has not yet been recognized. In the present study, the origin and evolution of the SARS-CoV-2 virus in comparison with the two SARS-CoV and Middle East respiratory syndrome coronavirus (MERS-CoV) respiratory syndrome viruses, as well as the genetic and phylogenetic evidences regards SARS-COV-2 was discussed.

کلیدواژه‌ها [English]

  • COVID-19, Severe acute respiratory syndrome-corona virus
  • Origin
  • Evolution

مراجع

  1. Zhong NS, Zheng BJ, Li YM, Poon, Xie ZH, Chan KH, et al. Epidemiology and cause of severe acute respiratory syndrome (SARS) in Guangdong, People's Republic of China, in February, 2003. Lancet 2003; 362(9393): 1353-8.
  2. Cui J, Li F, Shi ZL. Origin and evolution of pathogenic coronaviruses. Nat Rev Microbiol 2019; 17(3): 181-92.
  3. Zaki AM, van BS, Bestebroer TM, Osterhaus AD, Fouchier RA. Isolation of a novel coronavirus from a man with pneumonia in Saudi Arabia. N Engl J Med 2012; 367(19): 1814-20.
  4. Gorbalenya AE, Baker SC, Baric RS, de Groot RJ, Drosten C, Gulyaeva AA, et al. Severe acute respiratory syndrome-related coronavirus: The species and its viruses a statement of the Coronavirus Study Group. Nat Microbiol 2020; 5(5): 1-15.
  5. Sun J, He WT, Wang L, Lai A, Ji X, Zhai X, et al. COVID-19: Epidemiology, evolution, and cross-disciplinary perspectives. Trends Mol Med 2020; 26(5): 483-95.
  6. Ashour HM, Elkhatib WF, Rahman MM, Elshabrawy HA. Insights into the recent 2019 novel coronavirus (SARS-CoV-2) in light of past human coronavirus outbreaks. Pathogens 2020; 9(3): 186.
  7. Woo PC, Lau SK, Lam CS, Lau CC, Tsang AK, Lau JH, et al. Discovery of seven novel Mammalian and avian coronaviruses in the genus deltacoronavirus supports bat coronaviruses as the gene source of alphacoronavirus and betacoronavirus and avian coronaviruses as the gene source of gammacoronavirus and deltacoronavirus. J Virol 2012; 86(7): 3995-4008.
  8. Forni D, Cagliani R, Clerici M, Sironi M. Molecular evolution of human coronavirus genomes. Trends Microbiol 2017; 25(1): 35-48.
  9. World Health Organization. Coronavirus disease (COVID-19): Weekly epidemiological, update 1 [online]. [cited 2020 Aug 17]; Available from: URL: https://apps.who.int/iris/handle/10665/333905
  10. Zhou P, Yang XL, Wang XG, Hu B, Zhang L, Zhang W, et al. A pneumonia outbreak associated with a new coronavirus of probable bat origin. Nature 2020; 579(7798): 270-3.
  11. Chen Y, Liu Q, Guo D. Emerging coronaviruses: Genome structure, replication, and pathogenesis. J Med Virol 2020; 92(4): 418-23.
  12. Shereen MA, Khan S, Kazmi A, Bashir N, Siddique R. COVID-19 infection: Origin, transmission, and characteristics of human coronaviruses. J Adv Res 2020; 24: 91-8.
  13. Zhou P, Yang XL, Wang XG, Hu B, Zhang L, Zhang W, et al. Discovery of a novel coronavirus associated with the recent pneumonia outbreak in humans and its potential bat origin. bioRxiv 2020.
  14. Qian Z, Travanty EA, Oko L, Edeen K, Berglund A, Wang J, et al. Innate immune response of human alveolar type II cells infected with severe acute respiratory syndrome-coronavirus. Am J Respir Cell Mol Biol 2013; 48(6): 742-8.
  15. Raj VS, Mou H, Smits SL, Dekkers DH, Muller MA, Dijkman R, et al. Dipeptidyl peptidase 4 is a functional receptor for the emerging human coronavirus-EMC. Nature 2013; 495(7440): 251-4.
  16. Wan Y, Shang J, Graham R, Baric RS, Li F. Receptor recognition by the novel coronavirus from Wuhan: An analysis based on decade-long structural studies of SARS coronavirus. J Virol 2020; 94(7).
  17. Andersen KG, Rambaut A, Lipkin WI, Holmes EC, Garry RF. The proximal origin of SARS-CoV-2. Nat Med 2020; 26(4): 450-2.
  18. Guan Y, Zheng BJ, He YQ, Liu XL, Zhuang ZX, Cheung CL, et al. Isolation and characterization of viruses related to the SARS coronavirus from animals in southern China. Science 2003; 302(5643): 276-8.
  19. Kan B, Wang M, Jing H, Xu H, Jiang X, Yan M, et al. Molecular evolution analysis and geographic investigation of severe acute respiratory syndrome coronavirus-like virus in palm civets at an animal market and on farms. J Virol 2005; 79(18): 11892-900.
  20. Tu C, Crameri G, Kong X, Chen J, Sun Y, Yu M, et al. Antibodies to SARS coronavirus in civets. Emerg Infect Dis 2004; 10(12): 2244-8.
  21. Lau SK, Woo PC, Li KS, Huang Y, Tsoi HW, Wong BH, et al. Severe acute respiratory syndrome coronavirus-like virus in Chinese horseshoe bats. Proc Natl Acad Sci USA 2005; 102(39): 14040-5.
  22. Li W, Shi Z, Yu M, Ren W, Smith C, Epstein JH, et al. Bats are natural reservoirs of SARS-like coronaviruses. Science 2005; 310(5748): 676-9.
  23. Wang MN, Zhang W, Gao YT, Hu B, Ge XY, Yang XL, et al. Longitudinal surveillance of SARS-like coronaviruses in bats by quantitative real-time PCR. Virol Sin 2016; 31(1): 78-80.
  24. Hu B, Zeng LP, Yang XL, Ge XY, Zhang W, Li B, et al. Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus. PLoS Pathog 2017; 13(11): e1006698.
  25. Haagmans BL, Al Dhahiry SH, Reusken CB, Raj VS, Galiano M, Myers R, et al. Middle East respiratory syndrome coronavirus in dromedary camels: an outbreak investigation. Lancet Infect Dis 2014; 14(2): 140-5.
  26. Chu DKW, Hui KPY, Perera RAPM, Miguel E, Niemeyer D, Zhao J, et al. MERS coronaviruses from camels in Africa exhibit region-dependent genetic diversity. Proc Natl Acad Sci USA 2018; 115(12): 3144-9.
  27. Alagaili AN, Briese T, Mishra N, Kapoor V, Sameroff SC, Burbelo PD, et al. Middle East respiratory syndrome coronavirus infection in dromedary camels in Saudi Arabia. mBio 2014; 5(2): e00884-14.
  28. Muller MA, Corman VM, Jores J, Meyer B, Younan M, Liljander A, et al. MERS coronavirus neutralizing antibodies in camels, Eastern Africa, 1983-1997. Emerg Infect Dis 2014; 20(12): 2093-5.
  29. Corman VM, Ithete NL, Richards LR, Schoeman MC, Preiser W, Drosten C, et al. Rooting the phylogenetic tree of middle East respiratory syndrome coronavirus by characterization of a conspecific virus from an African bat. J Virol 2014; 88(19): 11297-303.
  30. Wang Y, Liu D, Shi W, Lu R, Wang W, Zhao Y, et al. Origin and possible genetic recombination of the middle east respiratory syndrome coronavirus from the first imported case in China: Phylogenetics and Coalescence Analysis. mBio 2015; 6(5): e01280-15.
  31. Zhang L, Shen FM, Chen F, Lin Z. Origin and evolution of the 2019 novel coronavirus. Clin Infect Dis 2020; 71(15): 882-3.
  32. Ji W, Wang W, Zhao X, Zai J, Li X. Homologous recombination within the spike glycoprotein of the newly identified coronavirus may boost cross species transmission from snake to human. J Med Virol 2020; 92(4): 433-40.
  33. Benvenuto D, Giovanetti M, Ciccozzi A, Spoto S, Angeletti S, Ciccozzi M. The 2019-new coronavirus epidemic: Evidence for virus evolution. J Med Virol 2020; 92(4): 455-9.
  34. Chan JF, Kok KH, Zhu Z, Chu H, To KK, Yuan S, et al. Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan. Emerg Microbes Infect 2020; 9(1): 221-36.
  35. Wu F, Zhao S, Yu B, Chen YM, Wang W, Song ZG, et al. A new coronavirus associated with human respiratory disease in China. Nature 2020; 579(7798): 265-9.
  36. Zhang T, Wu Q, Zhang Z. Pangolin homology associated with 2019-nCoV. bioRxiv 2020.
  37. Tang X, Wu C, Li X, Song Y, Yao X, Wu X, et al. On the origin and continuing evolution of SARS-CoV-2. Natl Sci Rev 2020; nwaa036.
  38. Lu R, Zhao X, Li J, Niu P, Yang B, Wu H, et al. Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding. Lancet 2020; 395(10224): 565-74.
  39. Wu Y. Strong evolutionary convergence of receptor-binding protein spike between COVID-19 and SARS-related coronaviruses. bioRxiv 2020.
  40. Phan T. Genetic diversity and evolution of SARS-CoV-2. Infect Genet Evol 2020; 81: 104260.
مجله دانشکده پزشکی اصفهان
دوره 38، شماره 602 - شماره پیاپی 602
بهمن و اسفند 1399
صفحه 900-913

فایل ها

سابقه مقاله

  • تاریخ دریافت: 27 اردیبهشت 1399
  • تاریخ بازنگری: 07 اردیبهشت 1403
  • تاریخ پذیرش: 17 فروردین 1401

هم رسانی

ارجاع به این مقاله

آمار